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MolecularSequenceConnection

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MolecularSequenceConnection(
  _cursor: String
  _id: String
  _lastUpdate: String
  _tag: String
  _profile: String
  _security: String
  _source: String
  _text: String
  _content: String
  _list: String
  _has: String
  _type: String
  _sort: String
  _count: String
  _include: String
  _revinclude: String
  _summary: String
  _total: String
  _elements: String
  _contained: String
  _containedType: String
  chromosome: String
  identifier: String
  patient: String
  referenceseqid: String
  type: String
  variantEnd: String
  variantStart: String
  windowEnd: String
  windowStart: String
  chromosomeVariantCoordinate: String
  chromosomeWindowCoordinate: String
  referenceseqidVariantCoordinate: String
  referenceseqidWindowCoordinate: String
): ConnectionResult

Arguments​

MolecularSequenceConnection._cursor ● String scalar​

MolecularSequenceConnection._id ● String scalar​

MolecularSequenceConnection._lastUpdate ● String scalar​

MolecularSequenceConnection._tag ● String scalar​

MolecularSequenceConnection._profile ● String scalar​

MolecularSequenceConnection._security ● String scalar​

MolecularSequenceConnection._source ● String scalar​

MolecularSequenceConnection._text ● String scalar​

MolecularSequenceConnection._content ● String scalar​

MolecularSequenceConnection._list ● String scalar​

MolecularSequenceConnection._has ● String scalar​

MolecularSequenceConnection._type ● String scalar​

MolecularSequenceConnection._sort ● String scalar​

MolecularSequenceConnection._count ● String scalar​

MolecularSequenceConnection._include ● String scalar​

MolecularSequenceConnection._revinclude ● String scalar​

MolecularSequenceConnection._summary ● String scalar​

MolecularSequenceConnection._total ● String scalar​

MolecularSequenceConnection._elements ● String scalar​

MolecularSequenceConnection._contained ● String scalar​

MolecularSequenceConnection._containedType ● String scalar​

MolecularSequenceConnection.chromosome ● String scalar​

Chromosome number of the reference sequence

MolecularSequenceConnection.identifier ● String scalar​

The unique identity for a particular sequence

MolecularSequenceConnection.patient ● String scalar​

The subject that the observation is about

MolecularSequenceConnection.referenceseqid ● String scalar​

Reference Sequence of the sequence

MolecularSequenceConnection.type ● String scalar​

Amino Acid Sequence/ DNA Sequence / RNA Sequence

MolecularSequenceConnection.variantEnd ● String scalar​

End position (0-based exclusive, which menas the acid at this position will not be included, 1-based inclusive, which means the acid at this position will be included) of the variant.

MolecularSequenceConnection.variantStart ● String scalar​

Start position (0-based inclusive, 1-based inclusive, that means the nucleic acid or amino acid at this position will be included) of the variant.

MolecularSequenceConnection.windowEnd ● String scalar​

End position (0-based exclusive, which menas the acid at this position will not be included, 1-based inclusive, which means the acid at this position will be included) of the reference sequence.

MolecularSequenceConnection.windowStart ● String scalar​

Start position (0-based inclusive, 1-based inclusive, that means the nucleic acid or amino acid at this position will be included) of the reference sequence.

MolecularSequenceConnection.chromosomeVariantCoordinate ● String scalar​

Search parameter by chromosome and variant coordinate. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as chromosome-variant-coordinate=1$lt345$gt123, this means it will search for the MolecularSequence resource with variants on chromosome 1 and with position >123 and <345, where in 1-based system resource, all strings within region 1:124-344 will be revealed, while in 0-based system resource, all strings within region 1:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.

MolecularSequenceConnection.chromosomeWindowCoordinate ● String scalar​

Search parameter by chromosome and window. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as chromosome-window-coordinate=1$lt345$gt123, this means it will search for the MolecularSequence resource with a window on chromosome 1 and with position >123 and <345, where in 1-based system resource, all strings within region 1:124-344 will be revealed, while in 0-based system resource, all strings within region 1:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.

MolecularSequenceConnection.referenceseqidVariantCoordinate ● String scalar​

Search parameter by reference sequence and variant coordinate. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as referenceSeqId-variant-coordinate=NC_000001.11$lt345$gt123, this means it will search for the MolecularSequence resource with variants on NC_000001.11 and with position >123 and <345, where in 1-based system resource, all strings within region NC_000001.11:124-344 will be revealed, while in 0-based system resource, all strings within region NC_000001.11:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.

MolecularSequenceConnection.referenceseqidWindowCoordinate ● String scalar​

Search parameter by reference sequence and window. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as referenceSeqId-window-coordinate=NC_000001.11$lt345$gt123, this means it will search for the MolecularSequence resource with a window on NC_000001.11 and with position >123 and <345, where in 1-based system resource, all strings within region NC_000001.11:124-344 will be revealed, while in 0-based system resource, all strings within region NC_000001.11:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.

Type​

ConnectionResult object​